FishVehicleOntologies.zip contains 9 ontologies:

Fish.owl - an ontology representing the concept Fish;

Vehicle.owl - an ontology representing the concept Vehicle;

InitialOntology1.owl - the initial ontology used in the experiments about asymmetry and hybridity;

InitialOntology1insta.owl - the initial ontology used in the experiments about instantiation (case of instantiation of the Head);

InitialOntology1InstaMod.owl - the initial ontology used in the experiments about instantiation (case of instantiation of the Modifier);

InitialOntology1alignment.owl - the initial ontology used in the experiments about alignment (strong interpretation);

EmptyAlignment.owl - empty ontology, used only to run the app;

EmptyTest.owl - empty ontology, used only to run the app;

TestFV2.owl - ontology containing (among the others) the competency questions we used to evaluate our implementation of instantiation and feature alignment.

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paramsfv.zip contains 32 text files, corresponding to the preference orders that we used in our experiments. 
Each file is named in the following way: CombinedConcept-PreferenceOrderUsed-WeightAssignmentUsed–PercentageOfMovesAllowed(ProcedureUsed).txt