From 6e4bfb026340cd889b7a7d131da05dc157c0854b Mon Sep 17 00:00:00 2001
From: dfrisinghelli <daniel.frisinghelli@gmail.com>
Date: Thu, 20 May 2021 16:26:13 +0200
Subject: [PATCH] Minimal package setup.
---
climax/core/constants.py | 8 +
.../core/utils.py | 7 +-
requirements.txt | 25 ++
setup.py | 264 ++++++++++++++++++
4 files changed, 299 insertions(+), 5 deletions(-)
create mode 100644 climax/core/constants.py
rename Python/00_get_inventory.py => climax/core/utils.py (69%)
create mode 100644 requirements.txt
create mode 100644 setup.py
diff --git a/climax/core/constants.py b/climax/core/constants.py
new file mode 100644
index 0000000..fad3751
--- /dev/null
+++ b/climax/core/constants.py
@@ -0,0 +1,8 @@
+"""Constant parameters."""
+
+# !/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+# parameters defining a Cordex climate simulation
+CORDEX_PARAMETERS = ['Variable', 'Domain', 'Gcm', 'Scenario', 'Ensemble',
+ 'Rcm', 'Version', 'Frequency', 'Years']
diff --git a/Python/00_get_inventory.py b/climax/core/utils.py
similarity index 69%
rename from Python/00_get_inventory.py
rename to climax/core/utils.py
index f5ff519..e1985b2 100644
--- a/Python/00_get_inventory.py
+++ b/climax/core/utils.py
@@ -1,4 +1,4 @@
-"""Inventory of EuroCordex simuations."""
+"""Utility functions to process Cordex data."""
# !/usr/bin/env python
# -*- coding: utf-8 -*-
@@ -8,10 +8,7 @@ import pandas as pd
# locals
from pysegcnn.core.utils import search_files
-
-# parameters defining a Cordex climate simulation
-CORDEX_PARAMETERS = ['Variable', 'Domain', 'Gcm', 'Scenario', 'Ensemble',
- 'Rcm', 'Version', 'Frequency', 'Years']
+from climax.core.constants import CORDEX_PARAMETERS
def get_inventory(path):
diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 0000000..4a9945d
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,25 @@
+# install packages
+# $ conda install --file requirements.txt
+
+# scientific stack
+numpy
+pandas
+scipy
+scikit-learn
+statsmodels
+
+# data I/O
+cdo
+python-cdo
+xarray
+dask
+gdal
+rasterio
+netcdf4
+h5py
+h5netcdf
+
+# visualization
+matplotlib
+seaborn
+ipython
diff --git a/setup.py b/setup.py
new file mode 100644
index 0000000..5699b52
--- /dev/null
+++ b/setup.py
@@ -0,0 +1,264 @@
+"""A setuptools based setup module adapted from PyPa's sample project.
+
+See:
+https://packaging.python.org/en/latest/distributing.html
+https://github.com/pypa/sampleproject
+
+We reproduce their license terms here:
+
+Copyright (c) 2016 The Python Packaging Authority (PyPA)
+Copyright (c) 2018 Fabien Maussion
+Copyright (c) 2018 Daniel Frisinghelli
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of
+this file (the "Software"), to deal in
+the Software without restriction, including without limitation the rights to
+use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
+of the Software, and to permit persons to whom the Software is furnished to do
+so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
+"""
+
+# !/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+# builtins
+import os
+import codecs
+from setuptools import setup, find_packages
+
+# SETUP: PACKAGE PROPERTIES
+
+# Arguments marked as "Required" in the setup() function below must be included
+# for upload to PyPI. Fields marked as "Optional" may be commented out.
+
+# This is the name of your project. The first time you publish this
+# package, this name will be registered for you. It will determine how
+# users can install this project, e.g.:
+#
+# $ pip install myproject
+#
+# And where it will live on PyPI: https://pypi.org/project/myproject/
+#
+# There are some restrictions on what makes a valid project name
+# specification here:
+# https://packaging.python.org/specifications/core-metadata/#name
+PACKAGE_NAME = 'climax'
+
+
+# Versions should comply with PEP 440:
+# https://www.python.org/dev/peps/pep-0440/
+#
+# For a discussion on single-sourcing the version across setup.py and the
+# project code, see
+# https://packaging.python.org/en/latest/single_source_version.html
+VERSION = '0.0.1'
+
+
+# This is a one-line description or tagline of what your project does. This
+# corresponds to the "Summary" metadata field:
+# https://packaging.python.org/specifications/core-metadata/#summary
+DESCRIPTION = """Package hosting the codes for the CLIMAX project."""
+
+
+# This is an optional longer description of your project that represents
+# the body of text which users will see when they visit PyPI.
+#
+# Often, this is the same as your README, so you can just read it in from
+# that file directly:
+HERE = os.path.abspath(os.path.dirname(__file__))
+# Get the long description from the README file
+with codecs.open(os.path.join(HERE, 'README.md'), encoding='utf-8') as f:
+ LONG_DESCRIPTION = f.read()
+# This field corresponds to the "Description" metadata field:
+# https://packaging.python.org/specifications/core-metadata/#description-optional
+
+
+# Denotes that our long_description is in Markdown; valid values are
+# text/plain, text/x-rst, and text/markdown
+#
+# Optional if long_description is written in reStructuredText (rst) but
+# required for plain-text or Markdown; if unspecified, "applications should
+# attempt to render [the long_description] as text/x-rst; charset=UTF-8 and
+# fall back to text/plain if it is not valid rst" (see link below)
+#
+# This field corresponds to the "Description-Content-Type" metadata field:
+# https://packaging.python.org/specifications/core-metadata/#description-content-type-optional
+CONTENT_TYPE = 'text/markdown'
+
+
+# This should be a valid link to your project's main homepage.
+#
+# This field corresponds to the "Home-Page" metadata field:
+# https://packaging.python.org/specifications/core-metadata/#home-page-optional
+URL = 'https://gitlab.inf.unibz.it/REMSEN/climax'
+
+
+# This should be your name or the name of the organization which owns the
+# project.
+AUTHOR = 'Daniel Frisinghelli'
+
+
+# This should be a valid email address corresponding to the author listed
+# above.
+AUTHOR_EMAIL = 'daniel.frisinghelli@gmail.com'
+
+
+# Classifiers help users find your project by categorizing it.
+#
+# For a list of valid classifiers, see https://pypi.org/classifiers/
+CLASSIFIERS = [
+ # How mature is this project? Common values are
+ # 3 - Alpha
+ # 4 - Beta
+ # 5 - Production/Stable
+ 'Development Status :: 3 - Alpha',
+
+ # Specify the Python versions you support here. In particular, ensure
+ # that you indicate whether you support Python 2, Python 3 or both.
+ 'Programming Language :: Python :: 3',
+ 'Programming Language :: Python :: 3.7',
+
+ # License
+ 'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
+
+ # Operating System
+ 'Operating System :: OS Independent',
+
+ # Topic
+ 'Topic :: Scientific/Engineering :: Image Recognition',
+
+ # Audience
+ 'Intended Audience :: Science/Research'
+],
+
+
+# This field adds keywords for your project which will appear on the
+# project page. What does your project relate to?
+#
+# Note that this is a string of words separated by whitespace, not a list.
+KEYWORDS = """Cordex, Climate simulations, Bias Correction, Quantile Mapping"""
+
+# When your source code is in a subdirectory under the project root, e.g.
+# `src/`, it is necessary to specify the `package_dir` argument.
+# PACKAGE_DIR = {'': 'climax'}, # Optional
+
+# You can just specify package directories manually here if your project is
+# simple. Or you can use find_packages().
+#
+# Alternatively, if you just want to distribute a single Python file, use
+# the `py_modules` argument instead as follows, which will expect a file
+# called `my_module.py` to exist:
+#
+# py_modules=["my_module"],
+PACKAGES = find_packages(exclude=['tests'])
+
+
+# This field lists other packages that your project depends on to run.
+# Any package you put here will be installed by pip when your project is
+# installed, so they must be valid existing projects.
+#
+# For an analysis of "install_requires" vs pip's requirements files see:
+# https://packaging.python.org/en/latest/requirements.html
+INSTALL_REQUIRES = ['numpy',
+ 'pandas',
+ 'xarray',
+ 'dask',
+ 'scipy',
+ 'scikit-learn',
+ 'statsmodels'
+ 'gdal',
+ 'cdo',
+ 'python-cdo'
+ 'rasterio',
+ 'netcdf4',
+ 'h5py',
+ 'h5netcdf',
+ 'matplotlib',
+ 'seaborn',
+ 'ipython',
+ 'pysegcnn'
+ ]
+
+# Specify which Python versions you support. In contrast to the
+# 'Programming Language' classifiers above, 'pip install' will check this
+# and refuse to install the project if the version does not match. See
+# https://packaging.python.org/guides/distributing-packages-using-setuptools/#python-requires
+PYTHON_REQUIRES = '>=3.7'
+
+
+# List additional groups of dependencies here (e.g. development
+# dependencies). Users will be able to install these using the "extras"
+# syntax, for example:
+#
+# $ pip install sampleproject[dev]
+#
+# Similar to `install_requires` above, these must be valid existing
+# projects.
+EXTRAS_REQUIRE = {
+ 'tests': 'pytest',
+ }
+
+
+# If there are data files included in your packages that need to be
+# installed, specify them here.
+PACKAGE_DATA = {}
+
+
+# Although 'package_data' is the preferred approach, in some case you may
+# need to place data files outside of your packages. See:
+# http://docs.python.org/3.4/distutils/setupscript.html#installing-additional-files
+DATA_FILES = {}
+
+
+# To provide executable scripts, use entry points in preference to the
+# "scripts" keyword. Entry points provide cross-platform support and allow
+# `pip` to create the appropriate form of executable for the target
+# platform.
+ENTRY_POINTS = {}
+
+
+# List additional URLs that are relevant to your project as a dict.
+#
+# This field corresponds to the "Project-URL" metadata fields:
+# https://packaging.python.org/specifications/core-metadata/#project-url-multiple-use
+#
+# Examples listed include a pattern for specifying where the package tracks
+# issues, where the source is hosted, where to say thanks to the package
+# maintainers, and where to support the project financially. The key is
+# what's used to render the link text on PyPI.
+PROJECT_URLS = {}
+
+
+# SETUP YOUR PACKAGE
+setup(
+ name=PACKAGE_NAME, # Required
+ version=VERSION, # Required
+ description=DESCRIPTION, # Required
+ long_description=LONG_DESCRIPTION, # Optional
+ long_description_content_type=CONTENT_TYPE, # Optional
+ url=URL, # Optional
+ author=AUTHOR, # Optional
+ author_email=AUTHOR_EMAIL, # Optional
+ classifiers=CLASSIFIERS, # Optional
+ keywords=KEYWORDS, # Optional
+ packages=PACKAGES, # Required
+ # package_dir=PACKAGE_DIR, # Optional
+ install_requires=INSTALL_REQUIRES, # Required
+ extras_require=EXTRAS_REQUIRE, # Optional
+ package_data=PACKAGE_DATA, # Optional
+ data_files=DATA_FILES, # Optional
+ entry_points=ENTRY_POINTS, # Optional
+ project_urls=PROJECT_URLS, # Optional
+ python_requires=PYTHON_REQUIRES # Optional
+)
--
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