some more changes to the Dockerfile to deal with varying deploy scenarios

Dockerfile.dist

@@ -35,14 +35,16 @@ RUN groupadd tomcat8
 RUN useradd -s /bin/false -g tomcat8 -d /opt/tomcat8/ tomcat8
 
 # doesn't this make more sense?
-RUN chown tomcat8:tomcat8 /opt/tomcat8
+RUN chown -R tomcat8:tomcat8 /opt/tomcat8
 # RUN chgrp -R tomcat8 /opt/tomcat8/
 # RUN chmod -R g+r /opt/tomcat8/conf/
 # RUN chmod g+x /opt/tomcat8/conf/
 # RUN chown -R tomcat8 /opt/tomcat8/webapps/ /opt/tomcat8/work/ /opt/tomcat8/temp/ /opt/tomcat8/logs/
-# copy the init script
+# copy the init script and the modified catalina.sh
 COPY commul-customization/tomcat8 /etc/init.d/
 RUN chmod a+x /etc/init.d/tomcat8
+COPY commul-customization/catalina.sh /opt/tomcat8/bin/
+RUN chown tomcat8:tomcat8 /opt/lindat-dspace/installation/log/*
 
 # build nginx
 RUN apt-get install -y gcc zlib1g zlib1g-dev libpcre3 libpcre3-dev curl cpanminus
@@ -130,9 +132,15 @@ RUN make aai.min.js
 COPY commul-customization/certs/lindat-dev.key /etc/ssl/private/
 COPY commul-customization/certs/lindat-dev_eurac_edu.pem /etc/ssl/certs/
 
-# copy certificate for lindat
+# if deployed on lindat instead of lindat-dev comment the two lines above and uncomment the following 6 lines
+
+## copy certificate for lindat
 # COPY commul-customization/certs/lindat_eurac_edu.key /etc/ssl/private/
 # COPY commul-customization/certs/lindat_eurac_edu.crt /etc/ssl/certs/
+# COPY docker-lindat-dev2lindat.sh /tmp/
+# RUN chmod +x /tmp/docker-lindat-dev2lindat.sh
+# RUN /tmp/docker-lindat-dev2lindat.sh
+# RUN grep -rl lindat-dev /opt/lindat-common/public/ | xargs -i perl -pi -e 's/lindat-dev/lindat/g' {}
 
 
 # convenience setting of workdir