Adjusted environment and installation of pysegcnn.

README.md

@@ -39,13 +39,17 @@ environment name, in this case ``pysegcnn``. Activate your environment using:
 ```bash
 conda activate pysegcnn
 ```
-After activating your environment, type:
+After activating your environment, install the version of PyTorch and CUDA
+that your system supports by following this [guide](https://pytorch.org/get-started/locally/).
+Having [successfully installed](https://pytorch.org/get-started/locally/#linux-verification)
+PyTorch, type:
 
 ```bash
 pip install -e .
 ```
-This will install ``pysegcnn`` - if successful, you should be able to import
-``pysegcnn`` from any Python interpreter using
+Make sure you run the above command **from this repositories root directory
+within the activated ``pysegcnn`` conda environment**. If successful,
+you should be able to import ``pysegcnn`` from any Python interpreter using
 
 ```python
 import pysegcnn

environment.yml

-name: torch
+name: pysegcnn
 channels:
-  - pytorch
   - conda-forge
   - defaults
 dependencies:
-  - alabaster=0.7.12=py_0
-  - argh=0.26.2=pyh9f0ad1d_1002
-  - argon2-cffi=20.1.0=py37h4ab8f01_1
-  - astroid=2.3.3=py37_1
-  - atomicwrites=1.4.0=pyh9f0ad1d_0
-  - attrs=19.3.0=py_0
-  - autopep8=1.5.4=pyh9f0ad1d_0
-  - babel=2.8.0=py_0
-  - backcall=0.2.0=pyh9f0ad1d_0
-  - backports=1.0=py_2
-  - backports.functools_lru_cache=1.6.1=py_0
-  - bcrypt=3.1.7=py37h8055547_1
   - blas=1.0=mkl
-  - bleach=3.1.5=pyh9f0ad1d_0
   - boost-cpp=1.72.0=h89d28cc_2
-  - brotlipy=0.7.0=py37h4ab8f01_1000
-  - bzip2=1.0.8=hfa6e2cd_2
+  - bzip2=1.0.8=he774522_3
   - ca-certificates=2020.6.20=hecda079_0
-  - cairo=1.16.0=h8a5e50b_1003
   - certifi=2020.6.20=py37hc8dfbb8_0
-  - cffi=1.14.1=py37h26f1ce3_0
   - cfitsio=3.470=hbbe6aef_6
-  - chardet=3.0.4=py37hc8dfbb8_1006
-  - cloudpickle=1.5.0=py_0
-  - colorama=0.4.3=py_0
-  - cpuonly=1.0=0
-  - cryptography=3.0=py37h26f1ce3_0
-  - curl=7.71.1=h4b64cdc_4
-  - cycler=0.10.0=py_2
-  - decorator=4.4.2=py_0
-  - defusedxml=0.6.0=py_0
-  - diff-match-patch=20200713=pyh9f0ad1d_0
-  - docutils=0.16=py37hc8dfbb8_1
-  - entrypoints=0.3=py37hc8dfbb8_1001
-  - expat=2.2.9=he025d50_2
-  - flake8=3.8.3=py_1
+  - curl=7.71.1=h4b64cdc_5
+  - expat=2.2.9=h33f27b4_2
   - freetype=2.10.2=hd328e21_0
   - freexl=1.0.5=hd288d7e_1002
-  - future=0.18.2=py37hc8dfbb8_1
-  - gdal=3.1.1=py37hd44be9e_0
+  - gdal=3.1.2=py37h6ddc196_2
   - geos=3.8.1=he025d50_0
-  - geotiff=1.6.0=hcadc5cd_0
+  - geotiff=1.6.0=h09e6dc1_1
   - gettext=0.19.8.1=hb01d8f6_1002
   - glib=2.65.0=he4de6d7_0
   - hdf4=4.2.13=hf8e6fe8_1003
   - hdf5=1.10.6=nompi_he0bbb20_101
   - icc_rt=2019.0.0=h0cc432a_1
   - icu=64.2=he025d50_1
-  - idna=2.10=pyh9f0ad1d_0
-  - imagesize=1.2.0=py_0
-  - importlib-metadata=1.7.0=py37hc8dfbb8_0
-  - importlib_metadata=1.7.0=0
   - intel-openmp=2019.4=245
-  - intervaltree=3.0.2=py_0
-  - ipykernel=5.3.4=py37h5ca1d4c_0
-  - ipython=7.17.0=py37hc6149b9_0
-  - ipython_genutils=0.2.0=py_1
-  - ipywidgets=7.5.1=py_0
-  - isort=5.3.2=py37hc8dfbb8_0
-  - jedi=0.17.1=py37hc8dfbb8_0
-  - jinja2=2.11.2=pyh9f0ad1d_0
   - jpeg=9d=he774522_0
-  - jsonschema=3.2.0=py37hc8dfbb8_1
-  - jupyter=1.0.0=py_2
-  - jupyter_client=6.1.6=py_0
-  - jupyter_console=6.1.0=py_1
-  - jupyter_core=4.6.3=py37hc8dfbb8_1
   - kealib=1.4.13=h3b59ab9_1
-  - keyring=21.3.0=py37hc8dfbb8_0
-  - kiwisolver=1.2.0=py37heaa310e_0
   - krb5=1.17.1=hc04afaa_2
-  - lazy-object-proxy=1.5.1=py37h4ab8f01_0
   - libblas=3.8.0=14_mkl
   - libcblas=3.8.0=14_mkl
-  - libclang=9.0.1=default_hf44288c_0
-  - libcurl=7.71.1=h4b64cdc_4
-  - libffi=3.2.1=h6538335_1007
-  - libgdal=3.1.1=hbc6966c_0
-  - libiconv=1.15=hfa6e2cd_1006
+  - libcurl=7.71.1=h4b64cdc_5
+  - libffi=3.2.1=ha925a31_1007
+  - libgdal=3.1.2=h132428b_2
+  - libiconv=1.16=he774522_0
   - libkml=1.3.0=h7e985d0_1011
   - liblapack=3.8.0=14_mkl
   - libnetcdf=4.7.4=nompi_h256d12c_105
-  - libpng=1.6.37=hfe6a214_1
+  - libpng=1.6.37=ha81a0f5_2
   - libpq=12.3=hd9aa61d_0
-  - libsodium=1.0.17=h2fa13f4_0
-  - libspatialindex=1.9.3=he025d50_3
-  - libspatialite=4.3.0a=h51df0ed_1038
+  - libspatialite=4.3.0a=h9ed2f40_1039
   - libssh2=1.9.0=hb06d900_5
   - libtiff=4.1.0=h885aae3_6
   - libwebp-base=1.1.0=hfa6e2cd_3
-  - libxml2=2.9.10=h5d81f1c_2
-  - lz4-c=1.9.2=h62dcd97_1
+  - libxml2=2.9.10=h1006b36_2
+  - lz4-c=1.9.2=h62dcd97_2
   - m2w64-expat=2.1.1=2
   - m2w64-gcc-libgfortran=5.3.0=6
   - m2w64-gcc-libs=5.3.0=7
@@ -105,124 +52,33 @@ dependencies:
   - m2w64-libiconv=1.14=6
   - m2w64-libwinpthread-git=5.0.0.4634.697f757=2
   - m2w64-xz=5.2.2=2
-  - markupsafe=1.1.1=py37h8055547_1
-  - matplotlib=3.3.0=1
-  - matplotlib-base=3.3.0=py37h35e8a6e_1
-  - mccabe=0.6.1=py_1
-  - mistune=0.8.4=py37h8055547_1001
   - mkl=2019.4=245
   - mkl-service=2.3.0=py37hfa6e2cd_0
   - msys2-conda-epoch=20160418=1
-  - nbconvert=5.6.1=py37hc8dfbb8_1
-  - nbformat=5.0.7=py_0
-  - ninja=1.10.0=h1ad3211_0
-  - notebook=6.1.1=py37hc8dfbb8_0
-  - numpy=1.19.1=py37hae9e721_0
-  - numpydoc=1.1.0=pyh9f0ad1d_0
-  - olefile=0.46=py_0
+  - numpy=1.19.1=py37h7cee19a_2
   - openjpeg=2.3.1=h57dd2e7_3
   - openssl=1.1.1g=he774522_1
-  - packaging=20.4=pyh9f0ad1d_0
-  - pandoc=2.10.1=he774522_0
-  - pandocfilters=1.4.2=py_1
-  - paramiko=2.7.1=pyh9f0ad1d_1
-  - parso=0.7.0=pyh9f0ad1d_0
-  - pathtools=0.1.2=py_1
   - pcre=8.44=h6538335_0
-  - pexpect=4.8.0=py37hc8dfbb8_1
-  - pickleshare=0.7.5=py37hc8dfbb8_1001
-  - pillow=7.2.0=py37hc826c6e_1
-  - pip=20.2.1=py_0
-  - pixman=0.38.0=hfa6e2cd_1003
-  - pluggy=0.13.1=py37hc8dfbb8_2
-  - poppler=0.89.0=h5d62644_1
+  - pip=20.2.2=py_0
+  - poppler=0.89.0=h0cd1227_0
   - poppler-data=0.4.9=1
   - postgresql=12.3=he14cc48_0
-  - proj=7.0.0=haa36216_5
-  - prometheus_client=0.8.0=pyh9f0ad1d_0
-  - prompt-toolkit=3.0.6=py_0
-  - prompt_toolkit=3.0.6=0
-  - psutil=5.7.2=py37h4ab8f01_0
-  - pycodestyle=2.6.0=pyh9f0ad1d_0
-  - pycparser=2.20=pyh9f0ad1d_2
-  - pydocstyle=5.0.2=py_0
-  - pyflakes=2.2.0=pyh9f0ad1d_0
-  - pygments=2.6.1=py_0
-  - pylint=2.3.1=py37_0
-  - pynacl=1.3.0=py37h2fa13f4_1001
-  - pyopenssl=19.1.0=py_1
-  - pyparsing=2.4.7=pyh9f0ad1d_0
-  - pyqt=5.12.3=py37h6538335_1
-  - pyrsistent=0.16.0=py37h8055547_0
-  - pysocks=1.7.1=py37hc8dfbb8_1
+  - proj=7.1.0=h7d85306_1
   - python=3.7.8=h60c2a47_1_cpython
-  - python-dateutil=2.8.1=py_0
-  - python-jsonrpc-server=0.3.4=pyh9f0ad1d_1
-  - python-language-server=0.34.1=py37hc8dfbb8_0
   - python_abi=3.7=1_cp37m
-  - pytorch=1.6.0=py3.7_cpu_0
-  - pytz=2020.1=pyh9f0ad1d_0
-  - pywin32=227=py37hfa6e2cd_0
-  - pywin32-ctypes=0.2.0=py37hc8dfbb8_1001
-  - pywinpty=0.5.7=py37_0
-  - pyyaml=5.3.1=py37h8055547_0
-  - pyzmq=19.0.2=py37h453f00a_0
-  - qdarkstyle=2.8.1=pyh9f0ad1d_0
-  - qt=5.12.5=h7ef1ec2_0
-  - qtawesome=0.7.2=pyh9f0ad1d_0
-  - qtconsole=4.7.5=pyh9f0ad1d_0
-  - qtpy=1.9.0=py_0
-  - requests=2.24.0=pyh9f0ad1d_0
-  - rope=0.17.0=pyh9f0ad1d_0
-  - rtree=0.9.4=py37h804a536_1
-  - scipy=1.5.0=py37h9439919_0
-  - send2trash=1.5.0=py_0
-  - setuptools=49.3.1=py37hc8dfbb8_0
+  - scipy=1.5.2=py37h9439919_0
+  - setuptools=49.6.0=py37hc8dfbb8_0
   - six=1.15.0=pyh9f0ad1d_0
-  - snowballstemmer=2.0.0=py_0
-  - sortedcontainers=2.2.2=pyh9f0ad1d_0
-  - sphinx=3.2.0=py_0
-  - sphinxcontrib-applehelp=1.0.2=py_0
-  - sphinxcontrib-devhelp=1.0.2=py_0
-  - sphinxcontrib-htmlhelp=1.0.3=py_0
-  - sphinxcontrib-jsmath=1.0.1=py_0
-  - sphinxcontrib-qthelp=1.0.3=py_0
-  - sphinxcontrib-serializinghtml=1.1.4=py_0
-  - spyder=4.1.4=py37hc8dfbb8_0
-  - spyder-kernels=1.9.3=py37hc8dfbb8_0
-  - sqlite=3.32.3=he774522_1
+  - sqlite=3.33.0=he774522_0
   - tbb=2020.1=he980bc4_0
-  - terminado=0.8.3=py37hc8dfbb8_1
-  - testpath=0.4.4=py_0
   - tiledb=2.0.8=h71c485d_0
-  - tk=8.6.10=hfa6e2cd_0
-  - toml=0.10.1=pyh9f0ad1d_0
-  - torchvision=0.7.0=py37_cpu
-  - tornado=6.0.4=py37hfa6e2cd_0
-  - traitlets=4.3.3=py37hc8dfbb8_1
-  - typed-ast=1.4.1=py37hfa6e2cd_0
-  - ujson=1.35=py37h63f7a3c_1002
-  - urllib3=1.25.10=py_0
+  - tk=8.6.10=he774522_0
   - vc=14.1=h869be7e_1
   - vs2015_runtime=14.16.27012=h30e32a0_2
-  - watchdog=0.10.3=py37hc8dfbb8_1
-  - wcwidth=0.2.5=pyh9f0ad1d_1
-  - webencodings=0.5.1=py_1
-  - wheel=0.34.2=py_1
-  - widgetsnbextension=3.5.1=py37hc8dfbb8_1
-  - win_inet_pton=1.1.0=py37_0
+  - wheel=0.35.1=pyh9f0ad1d_0
   - wincertstore=0.2=py37_1003
-  - winpty=0.4.3=4
-  - wrapt=1.12.1=py37h8055547_1
-  - xerces-c=3.2.2=h6538335_1004
+  - xerces-c=3.2.3=ha925a31_1
   - xz=5.2.5=h62dcd97_1
-  - yaml=0.2.5=he774522_0
-  - yapf=0.30.0=pyh9f0ad1d_0
-  - zeromq=4.3.2=ha925a31_3
-  - zipp=3.1.0=py_0
   - zlib=1.2.11=h62dcd97_1007
   - zstd=1.4.5=h1f3a1b7_2
-  - pip:
-    - pyqt5-sip==4.19.18
-    - pyqtwebengine==5.12.1
-prefix: C:\Program Files\Miniconda3\envs\torch
+prefix: C:\Program Files\Miniconda3\envs\pysegcnn